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This E-RNAi option allows to evaluate/re-map existing long dsRNA- or siRNA sequences.


Page contents

Table of Contents


Selection of reagent and organism



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Select type of RNAi reagent

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Choose long dsRNAs for the evaluation of long dsRNAs (including esiRNAs) or siRNAs for the evaluation of short interfering RNAs.

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Select organism

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Select the organism used for the RNAi experiment.


Paste or upload a reagent sequence

It is recommended to paste reagent sequences in FASTA format. Raw sequences can also be pasted, however a query sequence must not contain any newline (each newline is interpreted as new query by E-RNAi).
Alternatively, reagent sequences can also be uploaded from file. Files must contain sequences in FASTA format and *.fa, *.fasta and *.txt file extensions are allowed only.
In the example below three reagent sequences from the HFA/DRSCv1 library were pasted in FASTA format.



After submitting the query, E-RNAi shows the queried reagent sequences as genome browser visualization (if they could be mapped).




The 'Submit Selection' button links to the settings page.