Child pages
  • ID or sequence input

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Comment: Migrated to Confluence 4.0

...

Selection of reagent and organism



Section
Column
width275px

Select type of RNAi reagent

Column
width525px

Choose long dsRNAs for the design of long dsRNAs (including esiRNAs) or siRNAs for the design of short interfering RNAs.

Section
Column
width275px

Select organism

Column
width525px

Select the organism used for the RNAi experiment.


Search by gene identifier

The types of available gene identifiers depend on the database, where the annotations were retrieved from:


Section
Column
width150px

Organism

Column
width150px

Source

Column
width500px

Available query identifiers

...

Section
Column
width150px

D. melanogaster

Column
width150px

FlyBase

Column
width500px

FBgn, CG identifiers and gene symbols (e.g. CG11992, FBgn0014018 or rel)

Section
Column
width150px

A. pisum

Column
width150px

AphidBase

Column
width500px

ACYPI, XM and LOC identifiers (from 'official gene consensus set', e.g. ACYPI006699, XM_001944230 or LOC100165774)

Section
Column
width150px

H. sapiens

Column
width150px

NCBI RefSeq

Column
width500px

Gene names, Entrez gene identifiers and RefSeq identifiers (e.g. RPS11, 6205 or NM_001015.3)

Section
Column
width150px

S. mediterranea

Column
width150px

SmedGD

Column
width500px

MAKER identifiers (mk4, from SmedGD) will work (e.g. mk4.023206.00)

Section
Column
width150px

S. cerevisiae, S. pombe

Column
width150px

EnsemblFungi

Column
width500px

Ensembl gene identifiers (e.g. YHR055C for budding yeast, SPMIT.05 for fission yeast)

Section
Column
width150px

C. elegans

Column
width150px

WormBase

Column
width500px

WBGene identifiers, sequence names and gene names (e.g. WBGene00006763, JC8.10 or unc-26)

Section
Column
width150px

C. briggsae

Column
width150px

WormBase

Column
width500px

WBGene identifiers, transcript identifiers (e.g. WBGene00032891, CBG11841)

Section
Column
width150px

A. gambiae

Column
width150px

VectorBase

Column
width500px

AGAP gene identifiers (e.g. AGAP000009)

Section
Column
width150px

A. aegypti

Column
width150px

VectorBase

Column
width500px

AAEL gene identifiers (e.g. AAEL000068)

Section
Column
width150px

M. musculus

Column
width150px

NCBI RefSeq

Column
width500px

Gene names, Entrez gene identifiers and RefSeq identifiers (e.g. Axin1, 12005 or NM_009733.2)

Section
Column
width150px

A. mellifera

Column
width150px

BeeBase

Column
width500px

GB gene identifiers (e.g. GB15421)

Section
Column
width150px

T. castaneum

Column
width150px

BeetleBase

Column
width500px

TC and GLEAN-prediction gene identifiers (e.g. TC004684 or GLEAN_04684)


Examples with identifiers specific to the selected organism are available as direct links on top of the identifier text-box.

...